Welcome to mycelyso’s documentation!

See mycelyso Readme for information.

Indices and tables

• Index
• Module Index
• Search Page

Contents:

• mycelyso Readme
  • Frontmatter
    • Screenshot
    • Installation and Analysis Tutorial Videos
    • Publication
    • Documentation
    • License
  • Getting mycelyso and Datasets
    • Example Datasets
    • Ways to install mycelyso
  • Pre-Bundled Windows Application
  • Docker
  • Packages for the conda Package manager
  • Packages from PyPI (for advanced users)
  • Directly from github (for advanced users)
  • mycelyso Quickstart
    • Running an analysis
    • Results visualization using mycelyso Inspector
    • Setting calibration data for TIFF files
    • Tunable Parameters
  • Docker
• License
  • The 2-clause BSD License
• Example HDF5 Insights
  • Opening the HDF5 file
  • Accessing Graph and Image Data
  • Accessing Tabular Data
• Example Alternative Growth Fit
  • Opening the HDF5 file
• mycelyso Developer Documentation
  • Subpackages
    • mycelyso.tunables
      • Module contents
    • mycelyso.highlevel package
      • Submodules
      • mycelyso.highlevel.nodeframe module
      • mycelyso.highlevel.pipeline module
      • mycelyso.highlevel.pixelframe module
      • mycelyso.highlevel.steps module
      • Module contents
    • mycelyso.misc package
      • Submodules
      • mycelyso.misc.graphml module
      • mycelyso.misc.regression module
      • mycelyso.misc.util module
      • Module contents
    • mycelyso.processing package
      • Submodules
      • mycelyso.processing.binarization module
      • mycelyso.processing.pixelgraphs module
      • Module contents
  • Module contents