mycelyso
stable
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Example HDF5 Insights
Example Alternative Growth Fit
mycelyso Developer Documentation
mycelyso
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Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
A
acquire_lock() (in module mycelyso.pilyso.misc.h5writer)
add() (mycelyso.pilyso.pipeline.pipeline.Pipeline method)
add_stage() (mycelyso.pilyso.pipeline.pipeline.PipelineExecutionContext method)
advanced_apply() (mycelyso.pilyso.misc.processpool.InProcessFakePool static method)
(mycelyso.pilyso.misc.processpool.NormalPool method)
(mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
all() (mycelyso.pilyso.imagestack.imagestack.Dimensions class method)
all_by_char() (mycelyso.pilyso.imagestack.imagestack.Dimensions class method)
App (class in mycelyso.pilyso.application.application)
AppInterface (class in mycelyso.pilyso.application.application)
apply() (mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
apply_async() (mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
args (mycelyso.pilyso.application.application.App attribute)
(mycelyso.pilyso.misc.processpool.Future attribute)
arguments() (mycelyso.highlevel.pipeline.Mycelyso method)
(mycelyso.pilyso.application.application.AppInterface method)
B
bataineh() (in module mycelyso.processing.binarization)
begin() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
binarize() (in module mycelyso.highlevel.steps)
BorderArtifactRemovalBorderSize (class in mycelyso.tunables)
box_detection() (in module mycelyso.pilyso.steps.steps)
BoxDetection (class in mycelyso.tunables)
bridged_access() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
by_char() (mycelyso.pilyso.imagestack.imagestack.Dimensions class method)
C
calculate_image_sha256_hash() (in module mycelyso.pilyso.steps.steps)
calculate_length() (in module mycelyso.misc.util)
calibration (mycelyso.pilyso.imagestack.imagestack.ImageStack.Metadata attribute)
(mycelyso.pilyso.imagestack.imagestack.Metadata attribute)
call() (mycelyso.pilyso.pipeline.pipeline.Pipeline method)
char (mycelyso.pilyso.imagestack.imagestack.Dimensions.Channel attribute)
(mycelyso.pilyso.imagestack.imagestack.Dimensions.Dimension attribute)
(mycelyso.pilyso.imagestack.imagestack.Dimensions.Height attribute)
(mycelyso.pilyso.imagestack.imagestack.Dimensions.PositionXY attribute)
(mycelyso.pilyso.imagestack.imagestack.Dimensions.PositionZ attribute)
(mycelyso.pilyso.imagestack.imagestack.Dimensions.Time attribute)
(mycelyso.pilyso.imagestack.imagestack.Dimensions.Width attribute)
check_fork() (mycelyso.pilyso.imagestack.imagestack.ImageStack method)
clean_by_radius() (in module mycelyso.misc.util)
clean_up() (in module mycelyso.highlevel.steps)
cleanup_adjacency() (mycelyso.highlevel.nodeframe.NodeFrame method)
CleanUpGaussianSigma (class in mycelyso.tunables)
CleanUpGaussianThreshold (class in mycelyso.tunables)
CleanUpHoleFillSize (class in mycelyso.tunables)
close() (mycelyso.pilyso.misc.processpool.InProcessFakePool method)
(mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
(mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
collect() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
Collected (class in mycelyso.pilyso.pipeline.executor)
command (mycelyso.pilyso.misc.processpool.Future attribute)
commit() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
Compress (class in mycelyso.pilyso.steps.steps)
CompressedObject (class in mycelyso.pilyso.misc.h5writer)
compression (mycelyso.pilyso.misc.h5writer.CompressedObject attribute)
compressions (mycelyso.pilyso.misc.h5writer.CompressedObject attribute)
convert_to_nodes() (in module mycelyso.highlevel.steps)
copy() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
copy_calibration() (in module mycelyso.pilyso.steps.steps)
create_boxcrop_from_subtracted_image() (in module mycelyso.pilyso.steps.steps)
create_graph() (mycelyso.highlevel.pixelframe.PixelFrame method)
CropHeight (class in mycelyso.tunables)
CropWidth (class in mycelyso.tunables)
cycles (mycelyso.highlevel.nodeframe.NodeFrame attribute)
D
data (mycelyso.pilyso.misc.h5writer.CompressedObject attribute)
debug (mycelyso.pilyso.misc.h5writer.CompressedObject attribute)
(mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment attribute)
debug_message() (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment method)
default (mycelyso.tunables.BorderArtifactRemovalBorderSize attribute)
(mycelyso.tunables.BoxDetection attribute)
(mycelyso.tunables.CleanUpGaussianSigma attribute)
(mycelyso.tunables.CleanUpGaussianThreshold attribute)
(mycelyso.tunables.CleanUpHoleFillSize attribute)
(mycelyso.tunables.CropHeight attribute)
(mycelyso.tunables.CropWidth attribute)
(mycelyso.tunables.NodeEndpointMergeRadius attribute)
(mycelyso.tunables.NodeJunctionMergeRadius attribute)
(mycelyso.tunables.NodeLookupCutoffRadius attribute)
(mycelyso.tunables.NodeLookupRadius attribute)
(mycelyso.tunables.NodeTrackingEndpointShiftRadius attribute)
(mycelyso.tunables.NodeTrackingJunctionShiftRadius attribute)
(mycelyso.tunables.RemoveSmallStructuresSize attribute)
(mycelyso.tunables.SkipBinarization attribute)
(mycelyso.tunables.StoreImage attribute)
(mycelyso.tunables.ThresholdingParameters attribute)
(mycelyso.tunables.ThresholdingTechnique attribute)
(mycelyso.tunables.TrackingMaximumCoverage attribute)
(mycelyso.tunables.TrackingMaximumRelativeShrinkage attribute)
(mycelyso.tunables.TrackingMaximumTipElongationRate attribute)
(mycelyso.tunables.TrackingMinimalGrownLength attribute)
(mycelyso.tunables.TrackingMinimalMaximumLength attribute)
(mycelyso.tunables.TrackingMinimumTipElongationRate attribute)
(mycelyso.tunables.TrackingMinimumTrackedPointCount attribute)
default_compression (mycelyso.pilyso.misc.h5writer.CompressedObject attribute)
Delete (class in mycelyso.pilyso.steps.steps)
Dimensions (class in mycelyso.pilyso.imagestack.imagestack)
dimensions (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView attribute)
Dimensions.Channel (class in mycelyso.pilyso.imagestack.imagestack)
Dimensions.Dimension (class in mycelyso.pilyso.imagestack.imagestack)
Dimensions.Height (class in mycelyso.pilyso.imagestack.imagestack)
Dimensions.PositionXY (class in mycelyso.pilyso.imagestack.imagestack)
Dimensions.PositionZ (class in mycelyso.pilyso.imagestack.imagestack)
Dimensions.Time (class in mycelyso.pilyso.imagestack.imagestack)
Dimensions.Width (class in mycelyso.pilyso.imagestack.imagestack)
dispatch() (mycelyso.pilyso.misc.processpool.Future method)
(mycelyso.pilyso.misc.processpool.FutureProcess method)
(mycelyso.pilyso.pipeline.pipeline.PipelineExecutionContext method)
DuckTypedApplyResult (class in mycelyso.pilyso.misc.processpool)
E
error (mycelyso.pilyso.misc.processpool.Future attribute)
Every (class in mycelyso.pilyso.pipeline.executor)
every_dict (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView attribute)
every_dict_image (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView attribute)
every_index (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView attribute)
every_index_image (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView attribute)
exception (mycelyso.pilyso.misc.processpool.WrappedException attribute)
experimental_thresholding() (in module mycelyso.processing.binarization)
extensions (mycelyso.pilyso.imagestack.imagestack.ImageStack attribute)
F
fail() (mycelyso.pilyso.misc.processpool.DuckTypedApplyResult method)
(mycelyso.pilyso.misc.processpool.Future method)
feng() (in module mycelyso.processing.binarization)
fill_pool() (mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
filter() (mycelyso.pilyso.imagestack.imagestack.FloatFilter method)
(mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
(mycelyso.pilyso.imagestack.imagestack.ImageStackFilter method)
(mycelyso.pilyso.imagestack.imagestack.MinMaxFilter method)
(mycelyso.pilyso.imagestack.imagestack.UnwrapFilter method)
find_linear_window() (in module mycelyso.misc.regression)
FloatFilter (class in mycelyso.pilyso.imagestack.imagestack)
Future (class in mycelyso.pilyso.misc.processpool)
future_became_ready() (mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
FutureProcess (class in mycelyso.pilyso.misc.processpool)
G
generate_derived_data() (mycelyso.highlevel.nodeframe.NodeFrame method)
generate_graphml() (in module mycelyso.highlevel.steps)
generate_overall_graphml() (in module mycelyso.highlevel.steps)
get() (mycelyso.pilyso.misc.h5writer.CompressedObject method)
(mycelyso.pilyso.misc.processpool.DuckTypedApplyResult method)
(mycelyso.pilyso.misc.processpool.Future method)
get_all_neighbor_nums() (in module mycelyso.processing.pixelgraphs)
get_all_neighbors() (in module mycelyso.processing.pixelgraphs)
get_argnames_and_defaults() (in module mycelyso.pilyso.pipeline.pipeline)
get_cache() (mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
get_connected_nodes() (mycelyso.highlevel.nodeframe.NodeFrame method)
get_connectivity_map() (in module mycelyso.processing.pixelgraphs)
get_data() (mycelyso.pilyso.imagestack.imagestack.ImageStackAPI method)
get_inverse_neighbor_shift() (in module mycelyso.processing.pixelgraphs)
get_meta() (mycelyso.pilyso.imagestack.imagestack.ImageStackAPI method)
get_neighborhood_map() (in module mycelyso.processing.pixelgraphs)
get_networkx_graph() (mycelyso.highlevel.nodeframe.NodeFrame method)
get_next_neighbor() (in module mycelyso.processing.pixelgraphs)
get_path() (mycelyso.highlevel.nodeframe.NodeFrame method)
get_progress_bar() (in module mycelyso.pilyso.pipeline.executor)
get_step_keys() (mycelyso.pilyso.pipeline.pipeline.PipelineExecutionContext method)
get_subsampling() (mycelyso.pilyso.imagestack.imagestack.ImageStack method)
graph_statistics() (in module mycelyso.highlevel.steps)
H
handle_args() (mycelyso.highlevel.pipeline.Mycelyso method)
(mycelyso.pilyso.application.application.App method)
hdf5_node_name() (in module mycelyso.pilyso.misc.h5writer)
hdf5_output() (in module mycelyso.pilyso.misc.h5writer)
I
Image (class in mycelyso.pilyso.imagestack.imagestack)
image_source() (in module mycelyso.pilyso.steps.steps)
image_statistics() (in module mycelyso.highlevel.steps)
image_to_ndarray() (in module mycelyso.pilyso.steps.steps)
ImageStack (class in mycelyso.pilyso.imagestack.imagestack)
ImageStack.ImageStackAccessBridge (class in mycelyso.pilyso.imagestack.imagestack)
ImageStack.ImageStackView (class in mycelyso.pilyso.imagestack.imagestack)
ImageStack.Metadata (class in mycelyso.pilyso.imagestack.imagestack)
ImageStack.Position (class in mycelyso.pilyso.imagestack.imagestack)
ImageStackAPI (class in mycelyso.pilyso.imagestack.imagestack)
ImageStackFilter (class in mycelyso.pilyso.imagestack.imagestack)
in_cache() (mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
individual_tracking() (in module mycelyso.highlevel.steps)
init() (mycelyso.pilyso.imagestack.imagestack.ImageStackAPI method)
initialize() (mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
InProcessFakePool (class in mycelyso.pilyso.misc.processpool)
interactive_run() (mycelyso.highlevel.pipeline.Mycelyso method)
internal_options (mycelyso.pilyso.application.application.App attribute)
is_edge() (in module mycelyso.processing.pixelgraphs)
is_end() (in module mycelyso.processing.pixelgraphs)
is_endpoint() (mycelyso.highlevel.nodeframe.NodeFrame method)
is_fixed() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
is_junction() (in module mycelyso.processing.pixelgraphs)
(mycelyso.highlevel.nodeframe.NodeFrame method)
K
KEY_COLLECTED (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment attribute)
KEY_RESULT (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment attribute)
kwargs (mycelyso.pilyso.misc.processpool.Future attribute)
L
log (mycelyso.pilyso.application.application.App attribute)
M
main() (mycelyso.pilyso.application.application.App method)
mean_and_std() (in module mycelyso.processing.binarization)
message (mycelyso.pilyso.misc.processpool.WrappedException attribute)
Meta (class in mycelyso.pilyso.application.application)
meta (mycelyso.pilyso.pipeline.executor.Skip attribute)
Metadata (class in mycelyso.pilyso.imagestack.imagestack)
MinMaxFilter (class in mycelyso.pilyso.imagestack.imagestack)
multiprocessing (mycelyso.pilyso.pipeline.executor.PipelineExecutor attribute)
Mycelyso (class in mycelyso.highlevel.pipeline)
mycelyso (module)
mycelyso.highlevel (module)
mycelyso.highlevel.nodeframe (module)
mycelyso.highlevel.pipeline (module)
mycelyso.highlevel.pixelframe (module)
mycelyso.highlevel.steps (module)
mycelyso.misc (module)
mycelyso.misc.graphml (module)
mycelyso.misc.regression (module)
mycelyso.misc.util (module)
mycelyso.pilyso (module)
mycelyso.pilyso.application (module)
mycelyso.pilyso.application.application (module)
mycelyso.pilyso.application.helper (module)
mycelyso.pilyso.imagestack (module)
mycelyso.pilyso.imagestack.imagestack (module)
mycelyso.pilyso.misc (module)
mycelyso.pilyso.misc.h5writer (module)
mycelyso.pilyso.misc.processpool (module)
mycelyso.pilyso.pipeline (module)
mycelyso.pilyso.pipeline.executor (module)
mycelyso.pilyso.pipeline.pipeline (module)
mycelyso.pilyso.steps (module)
mycelyso.pilyso.steps.steps (module)
mycelyso.processing (module)
mycelyso.processing.binarization (module)
mycelyso.processing.pixelgraphs (module)
mycelyso.tunables (module)
MycelysoPipeline (class in mycelyso.highlevel.pipeline)
N
NeatDict (class in mycelyso.pilyso.pipeline.pipeline)
new_pipeline() (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment static method)
new_process() (mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
nick() (in module mycelyso.processing.binarization)
NodeEndpointMergeRadius (class in mycelyso.tunables)
NodeFrame (class in mycelyso.highlevel.nodeframe)
NodeJunctionMergeRadius (class in mycelyso.tunables)
NodeLookupCutoffRadius (class in mycelyso.tunables)
NodeLookupRadius (class in mycelyso.tunables)
NodeTrackingEndpointShiftRadius (class in mycelyso.tunables)
NodeTrackingJunctionShiftRadius (class in mycelyso.tunables)
normalize() (in module mycelyso.processing.binarization)
NormalPool (class in mycelyso.pilyso.misc.processpool)
NotDispatchedYet (class in mycelyso.pilyso.pipeline.executor)
notify_fork() (mycelyso.pilyso.imagestack.imagestack.ImageStackAPI method)
O
open() (mycelyso.pilyso.imagestack.imagestack.ImageStackAPI method)
options() (mycelyso.highlevel.pipeline.Mycelyso method)
(mycelyso.pilyso.application.application.AppInterface method)
order (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView attribute)
P
pairwise() (in module mycelyso.misc.util)
parse_parameters_after() (mycelyso.pilyso.imagestack.imagestack.ImageStack method)
parse_parameters_before() (mycelyso.pilyso.imagestack.imagestack.ImageStack method)
parse_range() (in module mycelyso.pilyso.application.application)
perform_get_data() (mycelyso.pilyso.imagestack.imagestack.ImageStack method)
perform_get_meta() (mycelyso.pilyso.imagestack.imagestack.ImageStack method)
phansalkar() (in module mycelyso.processing.binarization)
pilyso_app_generator() (in module mycelyso.pilyso.application.helper)
pin_index() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
pin_indices() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
Pipeline (class in mycelyso.pilyso.pipeline.pipeline)
pipeline_to_app() (in module mycelyso.pilyso.application.helper)
PipelineEnvironment (class in mycelyso.pilyso.pipeline.pipeline)
PipelineExecutionContext (class in mycelyso.pilyso.pipeline.pipeline)
PipelineExecutor (class in mycelyso.pilyso.pipeline.executor)
PipelineInvocation (class in mycelyso.pilyso.pipeline.pipeline)
PixelFrame (class in mycelyso.highlevel.pixelframe)
pool (mycelyso.pilyso.misc.processpool.Future attribute)
pos (mycelyso.pilyso.application.application.Meta attribute)
Position (class in mycelyso.pilyso.imagestack.imagestack)
(mycelyso.pilyso.imagestack.imagestack.Dimensions attribute)
position (mycelyso.pilyso.imagestack.imagestack.ImageStack.Metadata attribute)
(mycelyso.pilyso.imagestack.imagestack.Metadata attribute)
prepare_call() (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment method)
prepare_graph() (mycelyso.highlevel.nodeframe.NodeFrame method)
prepare_optimized_regression() (in module mycelyso.misc.regression)
prepare_position_regressions() (in module mycelyso.highlevel.steps)
prepare_tracked_fragments() (in module mycelyso.highlevel.steps)
prettify_numpy_array() (in module mycelyso.pilyso.application.application)
priority (mycelyso.pilyso.imagestack.imagestack.ImageStack attribute)
(mycelyso.pilyso.misc.processpool.Future attribute)
process (mycelyso.pilyso.misc.processpool.Future attribute)
progress_tick() (mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
pull_metadata_from_image() (in module mycelyso.pilyso.steps.steps)
Q
qimshow() (in module mycelyso.highlevel.steps)
quantify_binary() (in module mycelyso.highlevel.steps)
R
ready() (mycelyso.pilyso.misc.processpool.DuckTypedApplyResult method)
(mycelyso.pilyso.misc.processpool.Future method)
(mycelyso.pilyso.misc.processpool.FutureProcess method)
reassemble_result() (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment method)
release_lock() (in module mycelyso.pilyso.misc.h5writer)
remove_border_artifacts() (in module mycelyso.highlevel.steps)
remove_small_structures() (in module mycelyso.highlevel.steps)
RemoveSmallStructuresSize (class in mycelyso.tunables)
report_broken_process() (mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
rescale_image_to_uint8() (in module mycelyso.pilyso.steps.steps)
return_or_uncompress() (in module mycelyso.pilyso.misc.h5writer)
RUN (mycelyso.pilyso.misc.processpool.FutureProcess attribute)
run() (mycelyso.pilyso.application.application.App method)
(mycelyso.pilyso.misc.processpool.FutureProcess method)
(mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
(mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment method)
run_pipeline() (in module mycelyso.pilyso.application.helper)
S
sauvola() (in module mycelyso.processing.binarization)
schedule() (mycelyso.pilyso.misc.processpool.SimpleProcessPool method)
schemes (mycelyso.pilyso.imagestack.imagestack.ImageStack attribute)
send_command() (mycelyso.pilyso.misc.processpool.FutureProcess method)
set_cache() (mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
set_dimensions_and_sizes() (mycelyso.pilyso.imagestack.imagestack.ImageStack method)
set_empty_crops() (in module mycelyso.highlevel.steps)
set_progress_total() (mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
set_result() (in module mycelyso.pilyso.steps.steps)
set_workload() (mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
setup() (mycelyso.pilyso.application.application.App method)
(mycelyso.pilyso.application.application.AppInterface method)
SimpleProcessPool (class in mycelyso.pilyso.misc.processpool)
singleton_class_mapper() (in module mycelyso.pilyso.pipeline.executor)
size (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView attribute)
sizes (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView attribute)
skeletonize() (in module mycelyso.highlevel.steps)
Skip
skip_callback() (mycelyso.pilyso.pipeline.executor.PipelineExecutor method)
skip_if_image_is_below_size() (in module mycelyso.highlevel.steps)
SkipBinarization (class in mycelyso.tunables)
started_at (mycelyso.pilyso.misc.processpool.Future attribute)
STARTUP (mycelyso.pilyso.misc.processpool.FutureProcess attribute)
status (mycelyso.pilyso.misc.processpool.Future attribute)
STOP (mycelyso.pilyso.misc.processpool.FutureProcess attribute)
StoreImage (class in mycelyso.tunables)
substract_start_frame() (in module mycelyso.pilyso.steps.steps)
T
t (mycelyso.pilyso.application.application.Meta attribute)
test() (mycelyso.tunables.ThresholdingTechnique class method)
ThresholdingParameters (class in mycelyso.tunables)
ThresholdingTechnique (class in mycelyso.tunables)
time (mycelyso.pilyso.imagestack.imagestack.ImageStack.Metadata attribute)
(mycelyso.pilyso.imagestack.imagestack.Metadata attribute)
timeout (mycelyso.pilyso.misc.processpool.Future attribute)
to_graphml_string() (in module mycelyso.misc.graphml)
to_graphml_writer() (in module mycelyso.misc.graphml)
track() (mycelyso.highlevel.nodeframe.NodeFrame method)
track_multipoint() (in module mycelyso.highlevel.steps)
TrackingMaximumCoverage (class in mycelyso.tunables)
TrackingMaximumRelativeShrinkage (class in mycelyso.tunables)
TrackingMaximumTipElongationRate (class in mycelyso.tunables)
TrackingMinimalGrownLength (class in mycelyso.tunables)
TrackingMinimalMaximumLength (class in mycelyso.tunables)
TrackingMinimumTipElongationRate (class in mycelyso.tunables)
TrackingMinimumTrackedPointCount (class in mycelyso.tunables)
U
UnsupportedImageError
unwrap_result() (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment method)
UnwrapFilter (class in mycelyso.pilyso.imagestack.imagestack)
V
value (mycelyso.pilyso.misc.processpool.Future attribute)
(mycelyso.tunables.BorderArtifactRemovalBorderSize attribute)
(mycelyso.tunables.BoxDetection attribute)
(mycelyso.tunables.CleanUpGaussianSigma attribute)
(mycelyso.tunables.CleanUpGaussianThreshold attribute)
(mycelyso.tunables.CleanUpHoleFillSize attribute)
(mycelyso.tunables.CropHeight attribute)
(mycelyso.tunables.CropWidth attribute)
(mycelyso.tunables.NodeEndpointMergeRadius attribute)
(mycelyso.tunables.NodeJunctionMergeRadius attribute)
(mycelyso.tunables.NodeLookupCutoffRadius attribute)
(mycelyso.tunables.NodeLookupRadius attribute)
(mycelyso.tunables.NodeTrackingEndpointShiftRadius attribute)
(mycelyso.tunables.NodeTrackingJunctionShiftRadius attribute)
(mycelyso.tunables.RemoveSmallStructuresSize attribute)
(mycelyso.tunables.SkipBinarization attribute)
(mycelyso.tunables.StoreImage attribute)
(mycelyso.tunables.ThresholdingParameters attribute)
(mycelyso.tunables.ThresholdingTechnique attribute)
(mycelyso.tunables.TrackingMaximumCoverage attribute)
(mycelyso.tunables.TrackingMaximumRelativeShrinkage attribute)
(mycelyso.tunables.TrackingMaximumTipElongationRate attribute)
(mycelyso.tunables.TrackingMinimalGrownLength attribute)
(mycelyso.tunables.TrackingMinimalMaximumLength attribute)
(mycelyso.tunables.TrackingMinimumTipElongationRate attribute)
(mycelyso.tunables.TrackingMinimumTrackedPointCount attribute)
view() (mycelyso.pilyso.imagestack.imagestack.ImageStack.ImageStackView method)
W
wait (mycelyso.pilyso.pipeline.executor.PipelineExecutor attribute)
wait() (mycelyso.pilyso.misc.processpool.DuckTypedApplyResult method)
(mycelyso.pilyso.misc.processpool.Future method)
wait_for_lock_and_prepare_filename() (in module mycelyso.pilyso.misc.h5writer)
where2d() (in module mycelyso.processing.pixelgraphs)
wolf() (in module mycelyso.processing.binarization)
wrap() (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment method)
wrap_result() (mycelyso.pilyso.pipeline.pipeline.PipelineEnvironment method)
WrappedException
write_graphml() (in module mycelyso.misc.graphml)
X
x (mycelyso.pilyso.imagestack.imagestack.ImageStack.Position attribute)
(mycelyso.pilyso.imagestack.imagestack.Position attribute)
Y
y (mycelyso.pilyso.imagestack.imagestack.ImageStack.Position attribute)
(mycelyso.pilyso.imagestack.imagestack.Position attribute)
Z
z (mycelyso.pilyso.imagestack.imagestack.ImageStack.Position attribute)
(mycelyso.pilyso.imagestack.imagestack.Position attribute)
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