mycelyso.pilyso.steps package

Submodules

mycelyso.pilyso.steps.steps module

The steps file contains various generally reusable image processing steps.

class mycelyso.pilyso.steps.steps.Compress

Bases: object

class mycelyso.pilyso.steps.steps.Delete

Bases: object

mycelyso.pilyso.steps.steps.box_detection(ims, image, meta, reference_timepoint, shift=None, crop=None, angle=None)

mycelyso.pilyso.steps.steps.calculate_image_sha256_hash(image, image_sha256_hash=None)

mycelyso.pilyso.steps.steps.copy_calibration(collected, result)

mycelyso.pilyso.steps.steps.create_boxcrop_from_subtracted_image(subtracted_image, shift, angle, crop, result)

mycelyso.pilyso.steps.steps.image_source(ims, meta, image=None)

mycelyso.pilyso.steps.steps.image_to_ndarray(image)

mycelyso.pilyso.steps.steps.pull_metadata_from_image(image, timepoint=None, position=None, calibration=None)

mycelyso.pilyso.steps.steps.rescale_image_to_uint8(image)

mycelyso.pilyso.steps.steps.set_result(**kwargs)

mycelyso.pilyso.steps.steps.substract_start_frame(meta, ims, reference_timepoint, image, subtracted_image=None)

Module contents

The steps submodule contains various generally reusable image processing steps.